Publications

  1. Torres-Sanchez, A., Vanegas, J. M., and Arroyo, M. Geometric derivation of the microscopic stress: A covariant central force decomposition. J. Mech. Phys. Solids 93, 224 – 239 (2016) [PDF]

  2. Torres-Sanchez, A., Vanegas, J. M., and Arroyo, M. Examining the mechanical equilibrium of microscopic stresses in molecular simulations. Phys. Rev. Lett. 114, 258102 (2015). [PDF]

  3. Anishkin, A., Vanegas, J. M., Rogers, D. M., Lorenzi, P. L., Chan, W. K., Purwaha, P., Weinstein, J. N., Sukharev, S., and Rempe, S. B. Catalytic role of the substrate defines specificity of therapeutic L-asparaginase. J. Mol. Biol. 427, (17), 2867–2885 (2015) [PDF]

  4. Vanegas, J. M. and Arroyo, M. Force transduction and lipid binding in MscL: A continuum-molecular approach. PLoS ONE, 9 (12), e113947. (2014) [PDF]

  5. Vanegas, J. M., Torres-Sanchez, A., and Arroyo, M. Importance of force decomposition for local stress calculations in biomembrane molecular simulations. J. Chem. Theory Comput., 10, 691-702. (2014) [PDF]

  6. Vanegas, J. M., Contreras, M. F., Faller, R., and Longo, M. L. Role of unsaturated lipid and ergosterol in ethanol tolerance of model yeast biomembranes. Biophys. J., 102, 507-516. (2012) [PDF]

  7. Vanegas, J. M., Longo, M. L., and Faller, R. Crystalline, ordered and disordered lipid membranes: Convergence of stress profiles due to ergosterol. J. Am. Chem. Soc., 133, 3720-3723. (2011) [PDF]

  8. Vanegas, J. M., Faller, R., and Longo, M. L. Influence of ethanol on lipid/sterol membranes: Phase diagram construction from AFM imaging. Langmuir, 26, 10415-10418. (2010) [PDF]

  9. Goksu, I., Vanegas, J. M., Blanchette, C. D., Lin, W-C., and Longo, M. L. AFM for structure and dynamics of biomembranes. Biochim. Biophys. Acta, 1788, 254-266. (2009) [PDF]